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1

SPIE Proceedings [SPIE International Symposium on Optical Science and Technology - San Diego, CA (Sunday 29 July 2001)] Instruments, Methods, and Missions for Astrobiology IV - Protein array sensor for organics (PASO)

McKay, David S., Steele, Andrew, Warmflash, David M., Schweitzer, Mary, Pincus, Seth, Perez Mercader, Juan, Parro Garcia, Victor, Briones Llorente, Carlos, Hoover, Richard B., Levin, Gilbert V., Paepe

Year:

2002

Language:

english

File:

PDF, 106 KB

english, 2002

2

Phobos LIFE (Living Interplanetary Flight Experiment)

Betts, Bruce H., Warmflash, David, Fraze, Raymond E., Friedman, Louis, Vorobyova, Elena, Lilburn, Timothy G., Smith, Amy, Rettberg, Petra, Jönsson, K. Ingemar, Ciftcioglu, Neva, Fox, George E., Svitek

Journal:

Year:

2019

Language:

english

File:

PDF, 488 KB

english, 2019

3

Stem-cell-based embryo models for fundamental research and translation

Fu, Jianping, Warmflash, Aryeh, Lutolf, Matthias P.

Journal:

Nature Materials

Year:

2020

File:

PDF, 4.46 MB

2020

4

Dissecting the dynamics of signaling events in the BMP, WNT, and NODAL cascade during self-organized fate patterning in human gastruloids

Chhabra, Sapna, Liu, Lizhong, Goh, Ryan, Kong, Xiangyu, Warmflash, Aryeh, Lowell, Sally

Journal:

Year:

2019

Language:

english

File:

PDF, 17.62 MB

english, 2019

5

A novel self-organizing embryonic stem cell system reveals signaling logic underlying the patterning of human ectoderm

Britton, George, Heemskerk, Idse, Hodge, Rachel, Qutub, Amina A., Warmflash, Aryeh

Journal:

Development (The Company of Biologists)

Year:

2019

File:

PDF, 29.18 MB

2019

6

Coco is a dual activity modulator of TGF signaling

Deglincerti, A., Haremaki, T., Warmflash, A., Sorre, B., Brivanlou, A. H.

Journal:

Development (The Company of Biologists)

Year:

2015

Language:

english

File:

PDF, 3.30 MB

english, 2015

7

Chandra Observations of NGC 4636--an Elliptical Galaxy in Turmoil

Jones, C., Forman, W., Vikhlinin, A., Markevitch, M., David, L., Warmflash, A., Murray, S., Nulsen, P. E. J.

Journal:

The Astrophysical Journal

Year:

2002

Language:

english

File:

PDF, 665 KB

english, 2002

8

S-MiRAGE: A quantitative, secreted RNA-based reporter of gene expression and cell persistence

Mitra, Kinshuk, Feist, William, Anfossi, Simone, Fuentes-Mattei, Enrique, Almeida, Maria Ines, Kim, Jean J, Calin, George, Warmflash, Aryeh

Journal:

ACS Synthetic Biology

Year:

2018

Language:

english

File:

PDF, 22.76 MB

english, 2018

9

Nonequilibrium umbrella sampling in spaces of many order parameters

Dickson, Alex, Warmflash, Aryeh, Dinner, Aaron R.

Journal:

The Journal of Chemical Physics

Year:

2009

Language:

english

File:

PDF, 3.25 MB

english, 2009

10

Pluripotent stem cells as a model for embryonic patterning: From signaling dynamics to spatial organization in a dish

Heemskerk, Idse, Warmflash, Aryeh

Journal:

Developmental Dynamics

Year:

2016

Language:

english

File:

PDF, 1.07 MB

english, 2016

11

Pareto evolution of gene networks: an algorithm to optimize multiple fitness objectives

Warmflash, Aryeh, Francois, Paul, Siggia, Eric D

Journal:

Physical Biology

Year:

2012

Language:

english

File:

PDF, 5.17 MB

english, 2012

12

Self-organization of human embryonic stem cells on micropatterns

Deglincerti, Alessia, Etoc, Fred, Guerra, M Cecilia, Martyn, Iain, Metzger, Jakob, Ruzo, Albert, Simunovic, Mijo, Yoney, Anna, Brivanlou, Ali H, Siggia, Eric, Warmflash, Aryeh

Journal:

Nature Protocols

Year:

2016

Language:

english

File:

PDF, 1.92 MB

english, 2016

13

Field theoretic treatment of an effective action for a model of catalyzed autoamplification

Tchernookov, Martin, Warmflash, Aryeh, Dinner, Aaron R.

Journal:

Physical Review E

Year:

2010

Language:

english

File:

PDF, 165 KB

english, 2010

14

Harmonic Response of Cellular Membrane Pumps to Low Frequency Electric Fields

Nawarathna, D., Miller, J. H., Claycomb, J. R., Cardenas, G., Warmflash, D.

Journal:

Physical Review Letters

Year:

2005

Language:

english

File:

PDF, 1.65 MB

english, 2005

15

Dielectric Properties of Yeast Cells Expressed With the Motor Protein Prestin

John H. Miller, Dharmakeerthi Nawarathna, David Warmflash, Fred A. Pereira, William E. Brownell

Journal:

Journal of Biological Physics

Year:

2005

Language:

english

File:

PDF, 1.21 MB

english, 2005

16

The molecular circuitry underlying pluripotency in embryonic stem cells

Aryeh Warmflash, Brigitte L. Arduini, Ali H. Brivanlou

Journal:

Wiley Interdisciplinary Reviews: Systems Biology and Medicine

Year:

2012

Language:

english

File:

PDF, 223 KB

english, 2012

17

Comment on "Controlling long-term signaling: Receptor dynamics determine attenuation and refractory behavior of the TGF- pathway"--Smad2/3 activity does not predict the dynamics of transcription

Warmflash, A., Zhang, Q., Brivanlou, A. H., Siggia, E. D.

Journal:

Science Signaling

Year:

2014

Language:

english

File:

PDF, 239 KB

english, 2014

18

SMAD7 Directly Converts Human Embryonic Stem Cells to Telencephalic Fate by a Default Mechanism

Ozair, Mohammad Zeeshan, Noggle, Scott, Warmflash, Aryeh, Krzyspiak, Joanna Ela, Brivanlou, Ali H.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.66 MB

english, 2013

19

Critical behavior of a model for catalyzed autoamplification

Tchernookov, Martin, Warmflash, Aryeh, Dinner, Aaron R.

Journal:

The Journal of Chemical Physics

Year:

2009

Language:

english

File:

PDF, 117 KB

english, 2009

20

Phobos LIFE (Living Interplanetary Flight Experiment)

Betts, Bruce H., Warmflash, David, Fraze, Raymond E., Friedman, Louis, Vorobyova, Elena, Lilburn, Timothy G., Smith, Amy, Rettberg, Petra, Jönsson, K. Ingemar, Ciftcioglu, Neva, Fox, George E., Svitek

Journal:

Year:

2019

File:

PDF, 488 KB

2019

21

The roles of semantic networks and search efficiency in verbal fluency performance in intractable temporal lobe epilepsy

Alexander I. Tröster, Valerie Warmflash, Ivan Osorio, Anthony M. Paolo, Leslie J. Alexander, William B. Barr

Journal:

Epilepsy Research

Year:

1995

Language:

english

File:

PDF, 662 KB

english, 1995

22

Umbrella sampling for nonequilibrium processes

Warmflash, Aryeh, Bhimalapuram, Prabhakar, Dinner, Aaron R.

Journal:

The Journal of Chemical Physics

Year:

2007

Language:

english

File:

PDF, 553 KB

english, 2007

23

Control of Genotypic Allelic Inclusion through TCR Surface Expression

Warmflash, A., Weigert, M., Dinner, A. R.

Journal:

The Journal of Immunology

Year:

2005

Language:

english

File:

PDF, 470 KB

english, 2005

24

Synthetic Embryos: Windows into Mammalian Development

Warmflash, Aryeh

Journal:

Year:

2017

Language:

english

File:

PDF, 174 KB

english, 2017

25

Life Detection Using Glucose and Tetrasaccharide Enantiomer Pairs

Warmflash, David, Chu, Huanyi, Siefert, Johnathan, Fox, George E.

Journal:

Year:

2009

Language:

english

File:

PDF, 21.60 MB

english, 2009

26

Did Life Come from Another World?

Warmflash, David, Weiss, Benjamin

Journal:

Scientific American

Year:

2005

Language:

english

File:

PDF, 1.26 MB

english, 2005

27

Encoding of Temporal Signals by the TGF-β Pathway and Implications for Embryonic Patterning

Sorre, Benoit, Warmflash, Aryeh, Brivanlou, Ali H., Siggia, Eric D.

Journal:

Developmental Cell

Year:

2014

Language:

english

File:

PDF, 2.41 MB

english, 2014

28

Signatures of combinatorial regulation in intrinsic biological noise

Warmflash, A., Dinner, A. R.

Journal:

Proceedings of the National Academy of Sciences

Year:

2008

Language:

english

File:

PDF, 774 KB

english, 2008

29

Morphogen and community effects determine cell fates in response to BMP4 signaling in human embryonic stem cells

Nemashkalo, Anastasiia, Ruzo, Albert, Heemskerk, Idse, Warmflash, Aryeh

Journal:

Development (The Company of Biologists)

Year:

2017

Language:

english

File:

PDF, 9.46 MB

english, 2017

30

Multilineage Transcriptional Priming and Determination of Alternate Hematopoietic Cell Fates

Peter Laslo, Chauncey J. Spooner, Aryeh Warmflash, David W. Lancki, Hyun-Jun Lee, Roger Sciammas, Benjamin N. Gantner, Aaron R. Dinner, Harinder Singh

Journal:

Year:

2006

Language:

english

File:

PDF, 788 KB

english, 2006

31

Signaling dynamics and embryonic development

Warmflash, Aryeh, Siggia, Eric D., Brivanlou, Ali H.

Journal:

Year:

2012

Language:

english

File:

PDF, 416 KB

english, 2012

32

Endothelial cells decode VEGF-mediated Ca2+ signaling patterns to produce distinct functional responses

Noren, D. P., Chou, W. H., Lee, S. H., Qutub, A. A., Warmflash, A., Wagner, D. S., Popel, A. S., Levchenko, A.

Journal:

Science Signaling

Year:

2016

Language:

english

File:

PDF, 1.81 MB

english, 2016

33

Dynamics of TGF- signaling reveal adaptive and pulsatile behaviors reflected in the nuclear localization of transcription factor Smad4

Warmflash, A., Zhang, Q., Sorre, B., Vonica, A., Siggia, E. D., Brivanlou, A. H.

Journal:

Proceedings of the National Academy of Sciences

Year:

2012

Language:

english

File:

PDF, 1.92 MB

english, 2012

34

The Smallest Astronauts

Warmflash, David

Journal:

Scientific American

Year:

2011

Language:

english

File:

PDF, 292 KB

english, 2011

35

A method to recapitulate early embryonic spatial patterning in human embryonic stem cells

Warmflash, Aryeh, Sorre, Benoit, Etoc, Fred, Siggia, Eric D, Brivanlou, Ali H

Journal:

Year:

2014

Language:

english

File:

PDF, 1.76 MB

english, 2014

36

Infall of the Elliptical Galaxy NGC 1404 into the Fornax Cluster

Machacek, M., Dosaj, A., Forman, W., Jones, C., Markevitch, M., Vikhlinin, A., Warmflash, A., Kraft, R.

Journal:

The Astrophysical Journal

Year:

2005

Language:

english

File:

PDF, 409 KB

english, 2005

37

Defining cooperativity in gene regulation locally through intrinsic noise

Maienschein-Cline, M., Warmflash, A., Dinner, A.R.

Journal:

IET Systems Biology

Year:

2010

Language:

english

File:

PDF, 450 KB

english, 2010

38

SQUID-Based Biosensor for Probing Ion Transporters in Cell Suspensions and Tissue

Nawarathna, D., Claycomb, J.R., Cardenas, G., Vajrala, V., Warmflash, D., Gardner, J., Widger, W., Miller, J.H.

Journal:

IEEE Transactions on Appiled Superconductivity

Year:

2007

Language:

english

File:

PDF, 198 KB

english, 2007

39

Harmonic generation by yeast cells in response to low-frequency electric fields

Nawarathna, D., Claycomb, J. R., Cardenas, G., Gardner, J., Warmflash, D., Miller, J. H., Widger, W. R.

Journal:

Physical Review E

Year:

2006

Language:

english

File:

PDF, 100 KB

english, 2006

40

A Model for TCR Gene Segment Use

Warmflash, A., Dinner, A. R.

Journal:

The Journal of Immunology

Year:

2006

Language:

english

File:

PDF, 398 KB

english, 2006

41

Separating forward and backward pathways in nonequilibrium umbrella sampling

Dickson, Alex, Warmflash, Aryeh, Dinner, Aaron R.

Journal:

The Journal of Chemical Physics

Year:

2009

Language:

english

File:

PDF, 1.42 MB

english, 2009

42

SPIE Proceedings [SPIE Astronomical Telescopes and Instrumentation - Waikoloa, HI (Thursday 22 August 2002)] Instruments, Methods, and Missions for Astrobiology V - Detection of biomarkers of viable life in using immunoassay

Warmflash, David M., McKay, David S., Fox, George E., Steele, Andrew, Maule, Jake, Lynch, Kennda, Allen, Carl C., Hoover, Richard B., Rozanov, Alexei Y., Paepe, Roland R.

Year:

2003

Language:

english

File:

PDF, 77 KB

english, 2003

43

An incoherent regulatory network architecture that orchestrates B cell diversification in response to antigen signaling

Sciammas, R., Li, Y., Warmflash, A., Song, Y., Dinner, A. R., Singh, H.

Journal:

Molecular Systems Biology

Year:

2014

Language:

english

File:

PDF, 567 KB

english, 2014

44

How noise statistics impact models of enzyme cycles

Warmflash, Aryeh, Adamson, David N., Dinner, Aaron R.

Journal:

The Journal of Chemical Physics

Year:

2008

Language:

english

File:

PDF, 686 KB

english, 2008

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